Galaxy pipeline for metabolomics
bridge from R to Galaxy.org
1 June 2013
Skills
- GUI
- R
- shell
Devlopping interface pipeline for metabolomic data
As an intern in bioinformatics I have significantly contributed to project that combined R code with Galaxy.org interface in order to provide user-friendly pipeline for reseachers at Station Biologique de Roscoff
- Development : objet-oriented programming (Phyton), R, Unix environment, shell scripts
- Data structures: XML
- Biology/Chemistry: Mass Spectrometry GC/MS and LC-MS/MS, metabolomics
- Collaboration tools: videoconferences with collaborators
- Presentation and communication: co-author of a publication in JOBIM conference (see pdf below), presentations about Galaxy.org
- Work was developped forward and it was published in a high impact journal