Galaxy pipeline for metabolomics

bridge from R to Galaxy.org

1 June 2013

Skills

  • GUI
  • R
  • shell

Devlopping interface pipeline for metabolomic data

As an intern in bioinformatics I have significantly contributed to project that combined R code with Galaxy.org interface in order to provide user-friendly pipeline for reseachers at Station Biologique de Roscoff

  • Development : objet-oriented programming (Phyton), R, Unix environment, shell scripts
  • Data structures: XML
  • Biology/Chemistry: Mass Spectrometry GC/MS and LC-MS/MS, metabolomics
  • Collaboration tools: videoconferences with collaborators
  • Presentation and communication: co-author of a publication in JOBIM conference (see pdf below), presentations about Galaxy.org
  • Work was developped forward and it was published in a high impact journal

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by:
Urszula Czerwinska

(urszula.czerwinska@cri-paris.org)
http://urszulaczerwinska.github.io

Senior Data Scientist / Deep Learning Engineer

PhD in Bio-Mathematics, Data Science & Machine Learning