DeconICA

Deconvolution of transcriptome through Immune Component Analysis

AN R PACKAGE FOR IDENTIFYING IMMUNE-RELATED SIGNALS IN TRANSCRIPTOME THROUGH DECONVOLUTION OR UNSUPERVISED SOURCE SEPARATION METHODS

You can install deconICA from GitHub with:

#install.packages("devtools")
devtools::install_github("UrszulaCzerwinska/DeconICA", build_vignettes = TRUE, dependencies = TRUE)

It should be available shortly on CRAN

more information

• for examples and tutorial:

  vignette(topic ="DeconICA_introduction", package="deconica")
  

  or at

  • vignette 1 : Introduction to deconICA
  • vignette 2 : Running fastICA with icasso stabilisation
• list of functions

  help(package="deconica")
  

• pdf manual