Abbreviations

ACSN	Atlas of Cancer Signaling Networks
AI	Artificial Intelligence
BIODICA	ICA applied to Big Omics Data
BSS	Blind Source Separation
CAF	Cancer-Associated Fibroblasts
CNA	Copy Number Alterations
CNV	Copy Number Variation
CRI	Center for Interdisciplinary Research
DeconICA	Deconvolution of omic data through Immune Components Analysis
DEG	Differentially Expressed Genes
DGE	Differential Gene Expression
EM	Extracellular Matrix
EWAS	Epigenome-wide association study
FACS	Fluorescence-activated cell sorting
GSEA	Gene Set Enrichment Analysis
ICA	Independent Components Analysis
ML	Machine Learning
mRNA	messenger RNA
MSTD	Most Stable Transcriptomic Dimension
NGS	New Generation Sequencing
NK	Natural Killer
NMF	Non-negative Matrix Factorisation
PBMC	Peripheral blood mononuclear cell
PCA	Principal Components Analysis
RNA-seq	RNA sequencing
scRNA-seq	single cell RNA sequencing
SVM	Support Vector Machine
SVR	Support Vector Regression
TCGA	The Cancer Genome Atlas
TIL	Tumor Infiltrating Leucocytes
TMA	Tissue Microarrays
TME	Tumor Microenvironment
TPM	Transcripts Per Kilobase Million
t-SNE	T-distributed Stochastic Neighbor Embedding
UMAP	Uniform Manifold Approximation and Projection for Dimension Reduction